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Freight services

Mombasa to Juba Container Transport

The main way full containers reach South Sudan. This page covers the whole chain from the terminal gate to the consignee's yard in Juba, including the charges that are not ours and the deadlines that catch people out.

Published container rates

Mombasa to Juba full container (FCL) transport rates
Route Container size Cargo origin FCL transport rate Currency Transit time Container handling conditions Port charges Customs brokerage Deposit & detention Empty return Rate validity
Mombasa to Juba 20ft Kenyan export Contact us for current rates USD Confirm with us Confirm with us Confirm with us Confirm with us Confirm with us Confirm with us Contact us to confirm current validity
Mombasa to Juba 20ft International transit Contact us for current rates USD Confirm with us Confirm with us Confirm with us Confirm with us Confirm with us Confirm with us Contact us to confirm current validity
Mombasa to Juba 40ft Kenyan export Contact us for current rates USD Confirm with us Confirm with us Confirm with us Confirm with us Confirm with us Confirm with us Contact us to confirm current validity
Mombasa to Juba 40ft International transit Contact us for current rates USD Confirm with us Confirm with us Confirm with us Confirm with us Confirm with us Confirm with us Contact us to confirm current validity

Container deposits are set by the shipping line, not by us. Detention and demurrage start once the line's free days run out. See our guide to container detention and demurrage.

What an FCL move from Mombasa involves

1. Arrival and declaration

The line files the manifest and your declaration is lodged against it. That is either a Kenyan import entry, or a transit declaration if the goods are continuing to South Sudan. Under the Single Customs Territory arrangement, cargo destined for a partner state is declared and taxed at destination and moves on a single regional bond with electronic cargo tracking. (Kenya Revenue Authority, verified 19 Oct 2026)

South Sudan is not an EAC partner state in the same sense as the SCT members, so the exact regime applied to your container depends on its routing and declaration. We confirm this per shipment rather than assuming.

Read more on transit cargo through Kenya

2. Delivery order and container deposit

The shipping line issues a delivery order once its freight and charges are settled. Most lines also require a container deposit, which is refundable security against the equipment being returned on time and undamaged. The deposit is set by the line, held by the line, and refunded by the line. It isn't a freight charge and it isn't ours.

3. Port charges and release

Shore handling, wharfage and any accrued storage are payable to Kenya Ports Authority. The published tariff applies different scales to domestic and transit containers. (Kenya Ports Authority, verified 19 Oct 2026)

4. Collection and the road leg

The container is collected from the terminal, the seal is checked and recorded, and the unit runs north on the corridor through Nairobi, Malaba, Kampala, Gulu and Nimule to Juba.

5. Offloading and empty return

At destination the container is offloaded within the agreed free time. The empty then has to get back to where the line wants it. Who is responsible for that return, and who pays for it, is the most important thing to agree before the container moves. Juba is a long way from anywhere the line wants its box back. The rate table states the position for each rate.

Deposits, detention and demurrage

Three different charges that people routinely confuse:

Charge Levied by Triggered by
Storage Kenya Ports Authority Cargo sitting in the port yard beyond KPA's free period
Demurrage Shipping line Container still inside the terminal beyond the line's free days
Detention Shipping line Container outside the terminal, not yet returned empty

Full explanation of detention and demurrage

Get a quotation

Tell us what you are shipping

Send us the cargo description, weight or volume, and the pickup and delivery addresses. We reply with a written rate, the transit time and the documents you will need.

Prefer to talk? Call +254 181 748673, the same number as our WhatsApp. Messages sent from the button above arrive already typed, so you only have to hit send.

Choosing a container size

If you don't have enough to fill a container, LCL or groupage is usually cheaper than paying for air you don't use:

Information on this page last reviewed .

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